First, install the webgme-cwl following:
Second, start mongodb locally by running the mongod executable in your mongodb installation (you may need to create a data directory or set --dbpath).
Then, run webgme start from the project root to start . Finally, navigate to http://localhost:8888 to start using webgme-cwl!
The following rules are for most steps and how they are handling inputs and outputs.
- by default any input will be passed to the command and the prefix will be the name of the port (with '--')
- if you do not want to pass an input to the command, you need to set inside the input's config the 'skip field to true
- also if you do need the that given input you need to use the input config copyTo field and add a path relative to the execution directory
This step is trying to simplify the execution of any docker based command. The following parameters will complete the step and allow for fine-tuning.
- in the step's config, you can pass any of the 'docker...' fields (dockerPull, etc.) and they will be passed to the CWL files docker requirement as-is.
- this step also uses the config's 'baseCommand' field and use it as-is