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docker-compose.yml
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docker-compose.yml
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version: '2.1'
services:
db:
image: mysql:8.0
command: --default-authentication-plugin=mysql_native_password --expire_logs_days=3 --secure-file-priv="" --local-infile=1
cap_add:
- SYS_NICE # CAP_SYS_NICE, fix error mbind: Operation not permitted
restart: unless-stopped
environment:
- MYSQL_ROOT_HOST=%
- MYSQL_ROOT_PASSWORD=$MW_DB_INSTALLDB_PASS
- MYSQL_DATABASE=$MW_DB_NAME
volumes:
- ./__initdb:/docker-entrypoint-initdb.d
- ./_data/mysql:/var/lib/mysql
web:
image: ghcr.io/wikiteq/taqasta:1.35.8-20231101-114
restart: unless-stopped
extra_hosts:
- "gateway.docker.internal:host-gateway"
links:
- db
- redis
- elasticsearch
command: bash /entrypoint.sh
environment:
# DEFINE THIS VARIABLES IN .env FILE
- MW_NCBI_TAXONOMY_API_KEY
- MW_RECAPTCHA_SITE_KEY
- MW_RECAPTCHA_SECRET_KEY
- MW_ADMIN_USER
- MW_ADMIN_PASS
- MW_DB_NAME
- MW_DB_INSTALLDB_USER=root
- MW_DB_INSTALLDB_PASS
- MW_DB_USER=root
- MW_DB_PASS=$MW_DB_INSTALLDB_PASS
- MW_SECRET_KEY
# - XDEBUG_CONFIG=remote_host=0.0.0.0 remote_enable=1 remote_autostart=Off remote_connect_back=On
- MW_SITE_SERVER=${MW_SITE_SERVER:-https://bugsigdb.org}
- MW_SITE_NAME=BugSigDB
- MW_SITE_LANG=en
- MW_ENABLE_UPLOADS=1
- MW_USE_INSTANT_COMMONS=0
- MW_AUTOUPDATE=true
- MW_MAIN_CACHE_TYPE=CACHE_REDIS
- MW_LOAD_SKINS=Vector,chameleon
- MW_DEFAULT_SKIN=chameleon
- MW_LOAD_EXTENSIONS=GTag,CodeEditor,Nuke,ParserFunctions,ReplaceText,WikiEditor,Interwiki,CodeEditor,Scribunto,SyntaxHighlight_GeSHi,DataTransfer,Variables,PubmedParser,CodeMirror,Loops,MyVariables,Arrays,DisplayTitle,NCBITaxonomyLookup,SemanticExtraSpecialProperties,SemanticResultFormats
- MW_SEARCH_TYPE=CirrusSearch
- MW_PROXY_SERVERS=varnish:80
- MW_CACHE_PURGE_PAUSE=${MW_CACHE_PURGE_PAUSE:-3600}
- MW_CACHE_PURGE_PAGE=${MW_CACHE_PURGE_PAGE:-Main_Page}
- MW_ENABLE_SITEMAP_GENERATOR=${MW_ENABLE_SITEMAP_GENERATOR:-true}
- PHP_MEMORY_LIMIT=2048M
- MW_JOB_RUNNER_MEMORY_LIMIT=1G
volumes:
- ./_data/mediawiki:/mediawiki
- ./_logs/httpd:/var/log/apache2
- ./_logs/mediawiki:/var/log/mediawiki
- ./_settings/:/var/www/mediawiki/w/_settings
- ./_resources/.htaccess:/var/www/mediawiki/.htaccess
- ./_resources/favicon.ico:/var/www/mediawiki/favicon.ico
- ./_resources/logo.png:/var/www/mediawiki/w/logo.png
- ./_resources/chameleon:/var/www/mediawiki/w/skins/chameleon/custom
- ./_resources/footer_icons/cuny.png:/var/www/mediawiki/w/cuny.png
- ./_resources/footer_icons/mw.png:/var/www/mediawiki/w/mw.png
- ./_resources/footer_icons/smw.png:/var/www/mediawiki/w/smw.png
- ./_resources/footer_icons/ww.png:/var/www/mediawiki/w/ww.png
- ./_resources/footer_icons/bioc.png:/var/www/mediawiki/w/bioc.png
- ./_resources/extensions/Echo_patched_MBSD-230:/var/www/mediawiki/w/extensions/Echo
- ./_resources/extensions/DisplayTitle:/var/www/mediawiki/w/extensions/DisplayTitle # WLDR-366 TODO remove when merged
- ./_resources/extensions/DynamicPageList3:/var/www/mediawiki/w/extensions/DynamicPageList3
- ./_resources/extensions/SubpageWatchlist:/var/www/mediawiki/w/extensions/SubpageWatchlist
- ./_resources/extensions/SemanticScribunto:/var/www/mediawiki/w/extensions/SemanticScribunto
- ./_resources/extensions/SemanticDependencyUpdater:/var/www/mediawiki/w/extensions/SemanticDependencyUpdater
- ./_resources/extensions/PageForms:/var/www/mediawiki/w/extensions/PageForms
- ./_resources/extensions/CategoryLockdown:/var/www/mediawiki/w/extensions/CategoryLockdown
- ./_resources/googlef2273af339547660.html:/var/www/mediawiki/googlef2273af339547660.html
- ./entrypoint.sh:/entrypoint.sh
- ./cache_purge.sh:/cache_purge.sh
- sitemap:/mediawiki/sitemap
redis:
image: "redis:alpine"
restart: unless-stopped
volumes:
- ./_data/redis:/data
- ./_resources/redis.conf:/usr/local/etc/redis/redis.conf
elasticsearch:
image: docker.elastic.co/elasticsearch/elasticsearch:6.8.23
restart: unless-stopped
environment:
- discovery.type=single-node
- bootstrap.memory_lock=true
- "ES_JAVA_OPTS=-Xms512m -Xmx512m"
- cluster.routing.allocation.disk.threshold_enabled=true
- cluster.routing.allocation.disk.watermark.flood_stage=1gb
- cluster.routing.allocation.disk.watermark.high=2gb
- cluster.routing.allocation.disk.watermark.low=3gb
ulimits:
memlock:
soft: -1
hard: -1
volumes:
- ./_data/elasticsearch:/usr/share/elasticsearch/data
matomo:
image: matomo
restart: unless-stopped
links:
- db
ports:
- "127.0.0.1:8182:80"
environment:
- MATOMO_DATABASE_HOST=db
- MATOMO_DATABASE_DBNAME=matomo
- MATOMO_DATABASE_USERNAME=root
- MATOMO_DATABASE_PASSWORD=$MW_DB_INSTALLDB_PASS
volumes:
- ./_data/matomo:/var/www/html
varnish:
image: pastakhov/varnish:7.0
restart: unless-stopped
ports:
- "${PORT:-127.0.0.1:8081}:80"
links:
- web
tmpfs:
- /var/lib/varnish:exec
environment:
- VARNISH_SIZE=${VARNISH_SIZE:-2G}
- VARNISH_STORAGE_KIND=file
volumes:
- ./_resources/varnish:/etc/varnish/
- ./_data/varnish:/data
updateEFO:
image: python:3.7
restart: unless-stopped
environment:
- MW_BOT_USER
- MW_BOT_PASSWORD
# default is 24 hours
- MW_UPDATE_EFO_PAUSE=${MW_UPDATE_EFO_PAUSE:-86400}
volumes:
- ./updateEFO:/updateEFO
- ./_logs/updateEFO:/var/log/updateEFO
- ./updateEFO/rotatelogs-compress.sh:/rotatelogs-compress.sh
entrypoint:
- /updateEFO/updateEFO.sh
restic:
image: ghcr.io/wikiteq/restic-backup-docker:stream
restart: unless-stopped
links:
- db
environment:
- MW_DB_USER=root
- MW_DB_PASS=$MW_DB_INSTALLDB_PASS
- MW_DB_NAME=$MW_DB_NAME
- RESTIC_REPOSITORY=${MW_RESTIC_REPOSITORY}
- RESTIC_PASSWORD=${MW_RESTIC_PASSWORD:-rest1cpassw0rd}
- RESTIC_TAG=backup_full
- AWS_ACCESS_KEY_ID=${MW_RESTIC_S3_KEY}
- AWS_SECRET_ACCESS_KEY=${MW_RESTIC_S3_SECRET}
- BACKUP_CRON=0 1 * * 6
- CHECK_CRON=0 23 * * 5
- RESTIC_FORGET_ARGS=--prune --keep-weekly 1 --keep-monthly 2 --group-by paths
# pre-backup script
- RESTIC_PRE_BACKUP=if [ ! -d "/data" ]; then mkdir /data; fi && mysqldump -hdb -u$$MW_DB_USER -p$$MW_DB_PASS $$MW_DB_NAME | gzip -c > /data/database.sql.gz
# post-backup script
- RESTIC_POST_BACKUP=rm /data/database.sql.gz
- RESTIC_STREAM=yes
- RESTIC_STREAM_CMD=tar -cf - -C /data_mediawiki/ /data/database.sql.gz images
- RESTIC_STREAM_FILENAME=full.images.database.tar
volumes:
# read-only mount of mediawiki data directory for images access
- ./_data/mediawiki:/data_mediawiki:ro
# restic repository mount
- ./_data/restic:/mnt/restic
# logs
- ./_logs/restic:/var/log
volumes:
sitemap: