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Added Chapter 0 with lessons from Software Carpentry
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# Background - Blank Notebooks for Programming in Python (by Software Carpentry) | ||
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Chapter 0 includes the following computational notebooks: | ||
- [Software Carpentry's Python Fundamentals](https://swcarpentry.github.io/python-novice-inflammation/01-intro.html) | ||
- [Software Carpentry's Analyzing Patient Data](https://swcarpentry.github.io/python-novice-inflammation/01-intro.html) |
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{ | ||
"cells": [ | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": {}, | ||
"source": [ | ||
"# Software Carpentry - Analyzing Patient Data" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": {}, | ||
"source": [ | ||
"Read [Software Carpentry's Analyzing Patient Data](https://swcarpentry.github.io/python-novice-inflammation/02-numpy.html)." | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": {}, | ||
"source": [ | ||
"Using notebook cells below, type in the commands in the instructions to check your knowledge of Python variables. (The two cells below will get you started.)" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": 1, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"import numpy" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": 2, | ||
"metadata": {}, | ||
"outputs": [ | ||
{ | ||
"data": { | ||
"text/plain": [ | ||
"array([[0., 0., 1., ..., 3., 0., 0.],\n", | ||
" [0., 1., 2., ..., 1., 0., 1.],\n", | ||
" [0., 1., 1., ..., 2., 1., 1.],\n", | ||
" ...,\n", | ||
" [0., 1., 1., ..., 1., 1., 1.],\n", | ||
" [0., 0., 0., ..., 0., 2., 0.],\n", | ||
" [0., 0., 1., ..., 1., 1., 0.]])" | ||
] | ||
}, | ||
"execution_count": 2, | ||
"metadata": {}, | ||
"output_type": "execute_result" | ||
} | ||
], | ||
"source": [ | ||
"numpy.loadtxt(fname='inflammation-01.csv', delimiter=',')" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [] | ||
} | ||
], | ||
"metadata": { | ||
"kernelspec": { | ||
"display_name": "work", | ||
"language": "python", | ||
"name": "python3" | ||
}, | ||
"language_info": { | ||
"codemirror_mode": { | ||
"name": "ipython", | ||
"version": 3 | ||
}, | ||
"file_extension": ".py", | ||
"mimetype": "text/x-python", | ||
"name": "python", | ||
"nbconvert_exporter": "python", | ||
"pygments_lexer": "ipython3", | ||
"version": "3.11.4" | ||
} | ||
}, | ||
"nbformat": 4, | ||
"nbformat_minor": 2 | ||
} |
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{ | ||
"cells": [ | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": {}, | ||
"source": [ | ||
"# Software Carpentry - Python Fundamentals" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": {}, | ||
"source": [ | ||
"Read [Software Carpentry's Python Fundamentals](https://swcarpentry.github.io/python-novice-inflammation/01-intro.html). Start by scrolling down to the section on Variables." | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": {}, | ||
"source": [ | ||
"Using notebook cells below, type in the commands in the instructions to check your knowledge of Python variables. (The cell below is the first example.)" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"3 + 5 * 4" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"!wget https://github.com/swcarpentry/python-novice-inflammation/tree/main/episodes/data/inflammation-01.csv" | ||
] | ||
} | ||
], | ||
"metadata": { | ||
"language_info": { | ||
"name": "python" | ||
} | ||
}, | ||
"nbformat": 4, | ||
"nbformat_minor": 2 | ||
} |
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