deploy: c41022e

_sources/chapter0.md

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+# Background - Blank Notebooks for Programming in Python (by Software Carpentry)
+
+Chapter 0 includes the following computational notebooks:
+- [Software Carpentry's Python Fundamentals](https://swcarpentry.github.io/python-novice-inflammation/01-intro.html)
+- [Software Carpentry's Analyzing Patient Data](https://swcarpentry.github.io/python-novice-inflammation/01-intro.html)

_sources/chapter0/softwareCarpentry-AnalyzingPatientData.ipynb

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+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Software Carpentry - Analyzing Patient Data"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Read [Software Carpentry's Analyzing Patient Data](https://swcarpentry.github.io/python-novice-inflammation/02-numpy.html)."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Using notebook cells below, type in the commands in the instructions to check your knowledge of Python variables. (The two cells below will get you started.)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import numpy"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 2,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "array([[0., 0., 1., ..., 3., 0., 0.],\n",
+       "       [0., 1., 2., ..., 1., 0., 1.],\n",
+       "       [0., 1., 1., ..., 2., 1., 1.],\n",
+       "       ...,\n",
+       "       [0., 1., 1., ..., 1., 1., 1.],\n",
+       "       [0., 0., 0., ..., 0., 2., 0.],\n",
+       "       [0., 0., 1., ..., 1., 1., 0.]])"
+      ]
+     },
+     "execution_count": 2,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "numpy.loadtxt(fname='inflammation-01.csv', delimiter=',')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "work",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.11.4"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}

_sources/chapter0/softwareCarpentry-PythonFundamentals.ipynb

@@ -0,0 +1,50 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Software Carpentry - Python Fundamentals"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Read [Software Carpentry's Python Fundamentals](https://swcarpentry.github.io/python-novice-inflammation/01-intro.html). Start by scrolling down to the section on Variables."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Using notebook cells below, type in the commands in the instructions to check your knowledge of Python variables. (The cell below is the first example.)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "3 + 5 * 4"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "!wget https://github.com/swcarpentry/python-novice-inflammation/tree/main/episodes/data/inflammation-01.csv"
+   ]
+  }
+ ],
+ "metadata": {
+  "language_info": {
+   "name": "python"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}

_sources/chapter4/Insolation.ipynb

@@ -323,7 +323,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.5"
+   "version": "3.11.4"
   },
   "vscode": {
    "interpreter": {