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volume-em

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cem-dataset cem-dataset Public

Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.

Jupyter Notebook 24 1
empanada-napari empanada-napari Public

Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

Python 15 7
bootstrap2.5d bootstrap2.5d Public

Code for the paper: Enforcing Prediction Consistency Across Orthogonal Planes Significantly Improves Segmentation of FIB-SEM Image Volumes by 2D Neural Networks.

Python 1

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Showing 10 of 10 repositories

empanada-napari Public
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

Python 15 BSD-3-Clause 7 6 2 Updated Apr 22, 2024
BSS-Tracker Public
This is a project tracking tool that connects biological specimen entries with a project's investigator, biological sample and sample prep notes.

JavaScript 0 0 0 0 Updated Mar 18, 2024
empanada-napari-docs Public
Documentation for empanada-napari (https://github.com/volume-em/empanada-napari)

0 BSD-3-Clause 0 0 0 Updated Mar 15, 2024
empanada Public
Panoptic segmentation algorithms for 2D and 3D electron microscopy images

Python 1 GPL-2.0 0 4 2 Updated Feb 25, 2023
cem-dataset Public
Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.

Jupyter Notebook 24 BSD-3-Clause 1 0 1 Updated Dec 30, 2022
zooniverse-tools Public
Scripts and notebooks for data wrangling from Zooniverse.

Python 0 BSD-3-Clause 0 0 0 Updated Dec 13, 2022
volume-em.github.io Public
Projects developed for the volume EM community

1 0 0 0 Updated Oct 7, 2022
scikit-image Public Forked from scikit-image/scikit-image
Image processing in Python

Python 0 2,261 0 0 Updated Jun 3, 2022
cell-membrane-virus-interaction Public
Tools for measuring characteristics of virus-cell interactions from isotropic volume EM data.

Python 1 BSD-3-Clause 0 0 0 Updated Oct 21, 2021
bootstrap2.5d Public
Code for the paper: Enforcing Prediction Consistency Across Orthogonal Planes Significantly Improves Segmentation of FIB-SEM Image Volumes by 2D Neural Networks.

Python 1 BSD-3-Clause 0 0 0 Updated Nov 24, 2020

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