This simulation is an example of how boolean models can be integrated into Paul Macklin's team PhysiCell simulation using PhysiBoSS, in order to integrate more mechanistic details into cell-specific intracellular models.

Run in nanoHUB : https://nanohub.org/resources/pb4covid19

Run in Binder :

Run locally with Docker and Docker-compose

git clone https://github.com/vincent-noel/pb4covid19
cd pb4covid19
docker-compose up -d

And then open your browser to this url : http://localhost:8888/notebooks/pb4covid19.ipynb

Run locally with Docker

git clone https://github.com/vincent-noel/pb4covid19
cd pb4covid19
docker build -t pb4covid19 .
docker run -p 8888:8888 -d pb4covid19

And then open your browser to this url : http://localhost:8888/notebooks/pb4covid19.ipynb