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188 Open 383 Closed
188 Open 383 Closed
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Issues list

Unable to calculate estimated library size: samtools markdup
#587 opened Apr 16, 2024 by Shyamili09
bcftool error
#586 opened Mar 28, 2024 by SaraRHenderson
freebayes-parallel Error
#585 opened Mar 8, 2024 by xxxxxxsf
vcfstreamsort: error while loading shared libraries: libtabixpp.so.0: cannot open shared object file: No such file or directory vcfuniq: error while loading shared libraries: libtabixpp.so.0: cannot open shared object file: No such file or directory
#584 opened Mar 1, 2024 by shangguan77
3
™ BrokenPipeError: [Errno 32] Broken pipe, can you please assist for this error
#582 opened Feb 7, 2024 by EtienneNtumba
1
Snippy fails with genbank file
#581 opened Jan 29, 2024 by mesti90
2
Snippy: no output - identification of 0 variants and empty csv file
#580 opened Jan 25, 2024 by ZoseJapata
How to use snippy with pre-indexed reference
#579 opened Jan 14, 2024 by minhdz09
Which alignment file can be used to create SNP matrix for clonal studies
#578 opened Dec 14, 2023 by Firdoos071
Error running snippy
#577 opened Dec 14, 2023 by AlbaMunozSanta
Files to test an installation
#576 opened Dec 4, 2023 by jolespin
samtools excluded most reads
#574 opened Nov 20, 2023 by DorothyTamYiLing
Possible to set %identity of reads mapping to ref?
#573 opened Nov 20, 2023 by appliedmicrobiologyresearch
snippy-multi ERROR: Could not find .aligned.fa/.vcf in 100AEA1
#572 opened Nov 18, 2023 by drhoads
5
Using Snippy to identify the delete which is about 1kb to 5kb
#571 opened Nov 17, 2023 by TaoCheng98
libtabixpp.so.0: cannot open shared object file
#570 opened Oct 20, 2023 by DorothyTamYiLing
4
Can't run snippy-core with more than 1 CPU
#569 opened Oct 19, 2023 by Alejandro-PI
error
#566 opened Oct 7, 2023 by sekhwal
4
Missing build items in conda OR freebayes-parrallel problem
#565 opened Sep 22, 2023 by hughgifford
2
bug: contig mode does not find all snps
#564 opened Sep 14, 2023 by Saarkie
snippy core took isolate as ref
#563 opened Sep 3, 2023 by tbazilegith
1
Are SNPs quality filtered previous to snippy-core?
#562 opened Aug 30, 2023 by alanxelena
Got broken pipeline when running freebayes-parallel
#561 opened Aug 22, 2023 by buihoangphuc412
27
Snippy-multi returns 0 SNPs while snippy finds multiple
#560 opened Aug 21, 2023 by asad-869
bad ID for snippy-multi tab file
#559 opened Jul 19, 2023 by medp8144
ProTip! no:milestone will show everything without a milestone.