Issue #120 - fix ncbi ref, add megares

README.md

@@ -23,7 +23,7 @@ Otherwise consider using
 [Resfinder](https://cge.cbs.dtu.dk/services/ResFinder/),
 [RGI](https://card.mcmaster.ca/analyze/rgi),
 [SRST2](https://github.com/katholt/srst2),
-[AMRFinder](https://www.ncbi.nlm.nih.gov/pathogens/antimicrobial-resistance/AMRFinder/),
+[AMRFinderPlus](https://github.com/ncbi/amr#ncbi-antimicrobial-resistance-gene-finder-amrfinderplus),
 *etc.*
 
 ## Quick Start
@@ -242,14 +242,14 @@ If you publish the results of Abricate please cite both the software _and_
 the appropriate database you used with `--db`
 
 * Seemann T, *Abricate*, **Github** `https://github.com/tseemann/abricate`
+* NCBI AMRFinderPlus - [doi: 10.1128/AAC.00483-19](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811410)
 * CARD - [doi:10.1093/nar/gkw1004](https://www.ncbi.nlm.nih.gov/pubmed/27789705)
 * Resfinder - [doi:10.1093/jac/dks261](https://www.ncbi.nlm.nih.gov/pubmed/22782487)
-* NCBI - [doi:0.1101/550707](https://www.biorxiv.org/content/10.1101/550707v1)
 * ARG-ANNOT - [doi:10.1128/AAC.01310-13](https://www.ncbi.nlm.nih.gov/pubmed/24145532)
 * VFDB - [doi:10.1093/nar/gkv1239](https://www.ncbi.nlm.nih.gov/pubmed/26578559)
 * PlasmidFinder - [doi:10.1128/AAC.02412-14](https://www.ncbi.nlm.nih.gov/pubmed/24777092)
 * EcOH - [doi:10.1099/mgen.0.000064](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5343136/)
-
+* MEGARES 2.00 - [doi:10.1093/nar/gkz1010](https://academic.oup.com/nar/article/48/D1/D561/5624973)
 ## Issues
 
 Please report problems to the [Issues Page](https://github.com/tseemann/abricate/issues).