Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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Updated
May 14, 2024 - Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
Whole Exome/Whole Genome Sequencing alignment pipeline
Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.
Clinical Whole Genome and Exome Sequencing Pipeline
An automated tool for processing whole-exome sequencing data
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
🐳 Dockerized WES pipeline for variants identification in mathced tumor-normal samples
Constructing Neoantigen Vaccine Pipeline with pVACtools
Pipeline for copy number variant calling from Whole Exome sequencing data using CODEX
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
Genetic Medicine of African Populations
Workspace for data science projects and NGS pipelines. Contains RStudio, Jupyter Notebook, VSCode and file manager. Can connect to Tailscale network to bypass firewalls.
Map and post-process your bams for SNP calling
LOVD+ -- LOVD for diagnostics: analysis of whole-exome data using LOVD.
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