Gillespie Stochastic Simulation Algorithm
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Updated
Jun 29, 2013 - MATLAB
Gillespie Stochastic Simulation Algorithm
The Matlab tool for Prediction Uncertainty Analysis (PUA) integrates Profile Likelihood analysis with Bayesian sampling.
ADAPT toolbox for Matlab - Analysis of Dynamic Adaptations in Parameter Trajectories
Matlab code for Bayesian Network Component Analysis
An organism simulation framework based on cell growth and resultant emergent phenomena.
Some tools for performing Monte Carlo simulations of chemical reaction networks in my research
Dedicated command-line compiler for Systems Biology
Matlab code and data to reproduce results from "Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM" by Dreyfuss, Zucker, et al.
Reconstruct a Transcriptional Regulatory Network using the principle of Maximum Entropy.
The modeling code used for Manole et al, Canc Res, 2016.
Icahn Graduate School of Medicine: Systems Biology & Biotechnology Specialization
This script presents a simple stochastic description to model cell population distribution in the phases of the cell cycle
Simulating biochemical systems with input in Matlab
To show how to use odeint for biochemical simulation
Gas6 signaling model for TAM receptors
Chemical reaction balancing web service
yEd-flavored graphml <-> sbgnml
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