Matlab code for Bayesian Network Component Analysis
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Updated
Nov 11, 2015 - MATLAB
Matlab code for Bayesian Network Component Analysis
Imoto, H. & Okada, M. Signal-dependent regulation of early-response genes and cell cycle: a quantitative view. Curr. Opin. Syst. Biol. 15, 100–108 (2019).
Python implementation for René Thomas's Framework
The (rendered) website of the Resendis lab. Do not send PRs here! Use https://github.com/resendislab/website instead!
Multi-dimensional, trans-omics metabolic maps.
A Bio2BEL package for converting InterPro to BEL
Reproduce the figures in "The genetic basis for adaptation of model-designed syntrophic co-cultures"
DISBi is a framework to build Django apps to manage and integrate Sytems Biology data.
Parsing and transformation of units of measurements
Variational Gradient Matching for Dynamical Systems
Get concentration ranges for metabolites with structurally constrained concentrations (SCC).
A front-end visualization devoted to the knowledge about the human Tau protein
Principles and applications of systems biology (ChE-411) 2019-20
This is to show oscillations in the number of cells in G1 and in G2 phase of cell cycle.
Chiang, S., Shinohara, H., Huang, J. H., Tsai, H. K. & Okada, M. Inferring the transcriptional regulatory mechanism of signal-dependent gene expression via an integrative computational approach. FEBS Lett. (2020).
An SBML parser written in Rust.
Method for aligning biological replicate data
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Add a description, image, and links to the systems-biology topic page so that developers can more easily learn about it.
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