Simulator for SBML Models
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Updated
Mar 26, 2022 - Rust
Simulator for SBML Models
An SBML parser written in Rust.
Dynamical analysis of minimnal networks based on approximate majority algorithm (AM)
Parinsula is an interactive visual simulator of relatively isolated systems, which are a particular type of complex system.
Matlab code for resource balance analysis
An efficient Java™ solver implementation for SBML
CyberUnits is a cross-platform class library for rapid development of high-performance computer simulations in life sciences. It supports modelling for biomedical cybernetics and systems biology with Object Pascal.
Metabolic Network Toolbox for MATLAB
Lecture SS 2022 - Introduction to various topics in Systems Biology
Matlab code for Metabolic Economics calculations
Spatial Model Simulator with SBML Model
Julia interface to BioMASS
A package for researchers working with biological oscillations
Code and models for Flux-balance Enzyme Cost Minimization (fECM)
Matlab code and data for Enzyme Cost Minimisation
DMS1401ZB Mathematical Systems Biology
pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.
LibSBMLSim: A library for simulating SBML models (Version 2)
A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).
Patient-Specific Modeling in Python
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