precision-oncology

Here are 7 public repositories matching this topic...

sigven / pcgr

Personal Cancer Genome Reporter (PCGR)

interpreter cancer clinical tumor vcf cancer-genomics reporting-engine copy-number-variation annotation-tool somatic cancer-variants annotation-framework snvs oncology-data precision-oncology variant-interpretation therapeutic-targets precision-cancer-medicine

Updated May 10, 2024
R

pasmopy / pasmopy

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Patient-Specific Modeling in Python

python cancer systems-biology computational-biology precision-medicine kinetic-modeling personalized-medicine digital-twin precision-oncology systems-biology-simulation biochemical-networks in-silico-clinical-trial patient-specific-modeling

Updated Apr 29, 2024
Python

cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of cBioPortal used in the PM4Onco use case of the Medical Informatics Initiative Germany.

cbioportal fhir precision-oncology medical-informatics-initiative miracum

Updated May 10, 2024
Shell

pasmopy / breast_cancer

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A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).

cancer tcga breast-cancer-prediction breast-cancer stratification ccle digital-twin prognostic-biomarkers precision-oncology systems-biology-simulation breast-cancer-classification in-silico-clinical-trial patient-specific-modeling

Updated Sep 21, 2022
Python

buschlab / MIRACUM-Pipe-singularity

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MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of the pipeline running inside a singularity container.

bioinformatics ngs omics omics-pipeline precision-oncology medical-informatics-initiative miracum