Protein Graph Library
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Updated
May 3, 2024 - Jupyter Notebook
Protein Graph Library
A dependency-free cross-platform swiss army knife for PDB files.
A comprehensive library for computational molecular biology
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
macromolecular crystallography library and utilities
C-library for calculating Solvent Accessible Surface Areas
An all-atom protein structure dataset for machine learning.
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
The Integrative Modeling Platform
The Biochemical Algorithms Library
A Python framework for structural systems biology
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Control PyMOL sessions via IPython
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
Webpage of the Bonvinlab @ Utrecht University and HADDOCK software
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
Predicting protein structure through sequence modeling
Set of useful HADDOCK utility scripts
PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
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