Python wrapper and web-server for Ensembl VEP

Wrapper scripts for TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) and UNEAK (Universal Network Enabled Analysis Kit) v3.0 Genotyping by Sequencing (GBS) analysis pipelines

Counts all SNP mutations in .map file

The goal of this analysis is to explore the machine learning-based automatic diagnosis of colorectal patients based on the single nucleotide polymorphisms (SNP). Such a computational approach may be used complementary to other diagnosis tools, such as, biopsy, CT scan, and MRI. Moreover, it may be used as a low-cost screening for colorectal cancers

Docker based on bioconda distribution (v.1.23), with fixed memory issue

utility scripts for metagenomics, RNAseq etc. reads processing.

Linkage disequilibrium test tool to analyse all non-monomorphic single nucleotide polymorphisms

Workflow for biological validation of germline SNP and indel variant datasets.

SNP(VCF format) data preprocessing for GWAS disease prediction

RADtyping: a user-defined perl procedure for performing de novo RAD genotyping in mapping populations.

Perl software to cluster SNPs based on its genotype.

Программа для построения карт таксономического разнообразия SNP Y-хромосомы на основе открытых данных.

analizy dotyczące danych ze studenckiego projektu SKN Biologów Roślin "Mlecz" dotyczącego występowania Achillea millefolium w Karkonoszach wzdłuż gradientu wysokościowego

Introgression Browser v2.0 - Complete rewrite from the group up of Introgression Browser

A utility package handling Single Nucleotide polymorphism data in Python

Code snippet of an exam done during the course. Writted in python, used jinja2 templates.

Convert output from Samtools pileup into a matrix.

A chamada de variantes envolve a identificação de polimorfismos de nucleotídeo único (SNPs) e pequenas inserções e deleções (indels) em dados de Sequenciamento de Nova Geração (NGS). Nesta pipeline descrevo a detecção de SNP para identificação de possíveis alterações de aminoácidos em proteínas virais.

GTASSIST: Objective evaluation measures of genetic marker selection in SNP genotyping (2008-02-05)