Visual Studio Code extension that auto-detects Snakemake build steps
-
Updated
Dec 8, 2022 - TypeScript
Visual Studio Code extension that auto-detects Snakemake build steps
Snakemake pipeline to merge gnomAD VCF files
PLANTOGEN-A, an automated genome assembly pipeline designed to assemble symbiont microorganisms genome from Oxford Nanopore (ONT) data.
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
A concise tutorial on workflow management with Snakemake
A Snakemake workflow to analyse Illumina methylation arrays
Single-Cell RNA-seq analysis workflow for 10x Genomics data
Checks the sample contaminations and the sample swaps
A snakemake based workflow for ChIPSeq data analysis
Demonstration Snakemake workflow for Ronin/AWS Slurm-based auto-scaling cluster
Snakemake pipeline for detecting, annotating, filtering and visualising structure variations and gene fusions from WGS/WES.
Workflow designed for Download, QC, Assemble, Variant calling, and Annotate bacterial WGS in batch
Snakemake pipeline for analysis and normalization of Hi-C data starting from fastq.gz files. It includes the possibility to perform grouped analyses, TAD, loops and stripes detections, as well as differential compartment and chromatin interaction analyses.
Warlock is a snakemake workflow to spawn multiple demons (deme-based oncology models) as jobs running around on a cluster environment 😈😈
Add a description, image, and links to the snakemake topic page so that developers can more easily learn about it.
To associate your repository with the snakemake topic, visit your repo's landing page and select "manage topics."