scverse lineage tracing analysis toolkit
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Updated
May 16, 2024 - Python
scverse lineage tracing analysis toolkit
Single-cell analysis in Python. Scales to >1M cells.
Perturbation Analysis in the scverse ecosystem.
Deep probabilistic analysis of single-cell and spatial omics data
Notebooks used in scvi-tools tutorials
Electronic Health Record Analysis with Python.
Annotated data.
anndata with trees
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
muon is a multimodal omics Python framework
Muon for Julia
Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
Awesome GRN enhanced AnnData toolkit
Multimodal Data (.h5mu) implementation for Python
experimental interface between R and scvi-tools
Tutorials for multimodal omics data analysis
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