Coarse-grained molecular dynamics simulation with the Single-Interaction-Site RNA model
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Updated
Jun 4, 2024 - Fortran
Coarse-grained molecular dynamics simulation with the Single-Interaction-Site RNA model
A Go package for designing DNA.
This demo program takes an RNA sequence and applies a quadratic model in pursuit of the optimal stem configuration.
Implementation and visualization of dynamic programming based RNA secondary structure approximation
RNA Pseudoknotted Secondary Structure Prediction Using Strict Hierarchical Folding
RNA Pseudoknotted Secondary Structure Prediction Using Relaxed Hierarchical Folding
Julia interface to ViennaRNA for RNA structure prediction and analysis
Julia interface to LinearFold RNA structure prediction programs: LinearFold, LinearPartition, LinearSampling, and LinearTurboFold
Analyse Nucleic Acids Structure and Simulations with baRNAba
Julia interface to the RNAstructure program suite for RNA structure prediction and analysis
Nucleic acid secondary structure prediction and analysis
RNA/DNA/PMO Pseudoknotted Secondary Structure Interaction Prediction Using Relaxed Hierarchical Folding
nucleic acid folding
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
RNA design tool that utilizes reinforcement learning
RAFFT: RNA structure and folding dynamics predictions using the fast Fourier transform
2 homeworks for "Algorithms in Structural Biology" Master course of Data Science and Information Technologies (DSIT)
RNA folding; implementation of the Zuker algorithm.
🧬 Zuker: An RNA secondary structure prediction algorithm
Python implementation of Nussinov RNA folding algorithm and recursive backtrack.
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