Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

National and subnational estimates of the time-varying reproduction number for Covid-19

Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers

Real time estimation of epidemic Effective Reproduction Number for Luxembourg

A GitHub repo for the generation of a network model to represent society with various components, the spread of the disease on this network, and the calculation of reproduction number on these simulation results.

COVIDHunter 🦠:construction:: An accurate and flexible COVID-19 outbreak simulation model that forecasts the strength of future mitigation measures and the numbers of cases, hospitalizations, and deaths for a given day, while considering the potential effect of environmental conditions. Described by Alser et al. (preliminary version at https://ar…

Local area reproduction numbers and S-gene target failure.

Comparing crowd sourced and model derived forecasts of Covid-19 for Germany and Poland

Estimates of COVID-19 R_t in Real-Time.

Estimating the effective reproduction number Re(t) for COVID19 in GTA, Canada

Evaluating the use of the reproduction number as an epidemiological tool, using spatio-temporal trends of the Covid-19 outbreak in England.

Compute the effective reproduction number for an epidemic based on positive test ratio or absolute number of cases.

Subregional estimates of Rt for Covid-19 in Brazil

Source code of covid-india-analysis, a project to keep track of covid19 in India

📈 Real-time effective reproduction number for COVID-19 in the Netherlands

O índice de contágio do COVID-19 regionalizado, por estados, municípios e até bairros, em tempo real, pode apoiar a tomada de decisões do poder público sobre como conter o contágio e como conduzir a retomada da atividade econômica de forma segura.

Source code of covid-india-analysis, a project to keep track of covid19 in India

Herd Immunity Analyses of Bangladesh due to the SERS-CoV-2

Estimation of COVID 19 R_t,tau for Austria