Electronic notebook for "Deep reefs are not universal refuges: reseeding potential varies among coral species" (Science Advances, 2017)
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Updated
Mar 24, 2017 - Python
Electronic notebook for "Deep reefs are not universal refuges: reseeding potential varies among coral species" (Science Advances, 2017)
Simple program for in silico restriction digest of genomic sequences, to simulate RAD-family NGS library prep methods
GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.
Genomics pipeline to reproduce the analysis from Matthey-Doret et al., 2019, Genome Biology and Evolution
Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
R script employed in the manuscript 'Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii' to compute the distribution of FIS across loci into discrete classes
R script employed in the manuscript 'Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii' to compute the frequency of pairwise genetic distances among individuals.
grur: an R package tailored for RADseq data imputations
Population assignment analysis using R
stackr: an R package to run stacks software pipeline
Analyse RAD-tags and generate the Genetic Map with GWAS
This repository contains a number of bash and R scripts used in the processing of RADSeq data on the VSC supercomputer.
Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.
Random scripts, mostly for dealing with RADseq data and DNA sequence alignments
Assembly, analysis and visualization of ddRAD seq data for the plant genus Muscari.
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