RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase

GUI for binQTL

Mirror of micro-qtl repository.

Mirror of amplicon-qtl repository.

Scripts used for the 1415 Col4a5xDO project

Scripts for various molecular quantitative trait locus (xQTL) analysis.

This script was designed to find any QTLs near SNPs in the Sorghum QTL Atlas

We are investigating the genetic architecture of decayed sexual traits in asexual females of the parasitoid wasp Asobara japonia. In particular, we conduct QTL analysis for the female functional virginity trait, which referes to asexual females resisting to mate or not fertilizing eggs after mating. In the case of A. japonica, asexual females re…

QTL mapping workflow for BC1 population of Jaltomata.

echoverse module: Example data.

Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.

Data, script, and outputs for the guppy courtship behavior chapter of Nathan Phipps' M.S. thesis project (An extension of Laura Stein's guppy intercross project.) Study conducted at Colorado State University with funding from the National Science Foundation.

Linked Data Platform for Animal Breeding & Genomics

R package that implements Likelihood ratio test for pleiotropy v close linkage

A workflow based on QTLtools and tensorQTL to run cis- and trans-QTL analyses (SLURM based).

In-silico methods for finemapping of genetic regions in inbred mice

Scripts of Final Master Project

Kernelized HAplotype-based MIXed model association mapping (KHAMIX)

Data, script, and output used for the guppy QTL project by Nathan Phipps and Dr. Laura Stein, starting from 5/1/2020.