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protien-classification

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amazon-sagemaker-protein-classification

Implementation of Protein Classification based on subcellular localization using ProtBert(Rostlab/prot_bert_bfd_localization) model from Hugging Face library, based on BERT model trained on large corpus of protein sequences.

  • Updated May 3, 2024
  • Jupyter Notebook

Here is the application of Computer vision- Blob Detection methodology to detect and count the Envelope protiens of sample images of Human Coronavirus and mouse hepatitis virus (Image source- https://www.utmb.edu/virusimages/VI/coronaviruses and cdc)

  • Updated Jan 22, 2022
  • Jupyter Notebook

The transition from primary to secondary protein structure involves the folding of linear amino acid sequences (primary structure) into regular patterns like alpha-helices and beta-sheets (secondary structure). Deep learning-based prediction algorithms leverage neural network architectures to infer these patterns from primary sequence data.

  • Updated Apr 6, 2024
  • Jupyter Notebook

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