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Oct 17, 2017 - Python
protein-structure
Here are 483 public repositories matching this topic...
Superimpose a set of protein structures and report a RSMD matrix, in CSV and Mega-compatible formats, using Pymol as a module
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Jul 6, 2020 - Python
Create pseudoatoms at the centroid of the catalytic atoms of a residue
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Mar 26, 2024 - Rust
Performs large-scale ligand identification, curation and extraction from human structures in the Protein Data Bank.
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Mar 26, 2024 - Python
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May 6, 2017 - TeX
This script aims at reading a given PDB file and generation dihedral angles from it.
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Sep 27, 2017 - Python
Understanding the relationship between amino acid sequence and protein function is a long-standing problem in molecular biology with far-reaching scientific implications.
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Nov 11, 2022 - Jupyter Notebook
PSIQUE is a geometry-based secondary structure assignment method based on DFT calculations
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Aug 24, 2023 - Crystal
Extension for creating visualizations of distance restraints in PyRy3D Chimera Extension
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Oct 22, 2018 - Python
This repository contains the source code for the DebruijnExtend tool. This tool uses known secondary structures for common protein kmers to predict the most likely secondary structure. This is done using a debruijn graph approach to incorporate local homology for predicting the most probable secondary structure along a protein. Tested on mac/linux
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Apr 28, 2023 - Jupyter Notebook
Base package for the lecturing of LVCC module on "Computational Design of Proteins" @ Universidade de Aveiro, Portugal.
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Jan 24, 2022 - Python
Source code and files for structural network analysis of Cas9 RNP
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May 9, 2022 - C
Structural Bioinformatics Course @UAM
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Aug 29, 2023 - JavaScript
Code for analysing coarse grain interaction in Protein-SSDna complexes.
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Jun 13, 2023 - HTML
PSIST algorithm to index and query 3D protien structures
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Mar 29, 2020 - C++
Meta-Bio-Cargo predict #Ru-Bi-CO-S protein
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Mar 20, 2021 - Rust
This is a plugin for PyMol 2.x under Windows to find and show Ca-ion sites in a protein structure in pdb format using the Feature program.
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Apr 12, 2022 - Python
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Mar 22, 2022 - Python
The aim of this project is to correctly predict the con- tact types in given protein structures, which are to be pre- sented in PDB file format. MODELS: Random Forest, Neural Network, Support Vector Machine.
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Sep 23, 2022 - Jupyter Notebook
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