Superpose3D is a software for local comparison of protein structures that allows for user-defined structure representations
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Updated
May 6, 2015 - C++
Superpose3D is a software for local comparison of protein structures that allows for user-defined structure representations
A collection of useful tutorials for Protein Science
Tiny Scala API to stream, parse, and cache atom coordinates from Protein Data Bank files
Visualization of proteins directly from the PDB database or from a .pdb file.
Analysis of Protein-Flavin Interactions that Control Chemical Reactivity
defines the interface region of a protein complex making possible to calculate the i_rmsd between native and predicted structures following the CAPRI criteria
Web-based front- and backend for PDB2Movie scripts
Basic analysis of ligands extracted from structures described in Protein Data Bank
BioJava examples in Jupyter Notebooks
Some miscellaneous scripts I made to do protein analysis using the pytraj library
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.
Object-oriented processing of PDB files in Python
local PDB manager
Methods for mapping proteomics data on 3D protein structure.
Parse the CIF file format for Protein Data Bank (PDB) data.
Protein Data Bank (pdb) file parser
A script that computationally designs a vaccine
A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file.
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