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principal-components

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NMFADMM

JED is a program for performing Essential Dynamics of protein trajectories written in Java. JED is a powerful tool for examining the dynamics of proteins from trajectories derived from MD or Geometric simulations. Currently, there are two types of PCA: distance-pair and Cartesian, and three models: COV, CORR, and PCORR.

  • Updated May 18, 2018
  • HTML

DA incorporates the commonly used linear and non-linear, local and global supervised learning approaches (discriminant analysis). These discriminant analyses can be used to do ecological and evolutionary inference. We show the examples of demographic history inference, species identification, and population structure inference in the vignettes …

  • Updated Jul 11, 2021
  • R

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