Phylogeographic text-mining platform

Zika Phylogeography

An Integrated Phylogeographic Analysis of the Bantu Migration

R scripts for Marske et al 2020, Molecular Ecology

Scripts for file processing and analysis in phylogenetics and phylogeography

Phylogeographic analyses of ZIKV

This is the repository for the project "Evaluating species origins within tropical sky-islands arthropod communities"

Plague Global Phylogeny Manuscript

Phylogeographical analyses of SARS-CoV-2 variants of concern in Norway

Phylogeography of Yersinia pestis.

Welcome to the StrainHub Repo - Files and Data - StrainHub Online:

Genomic epidemiology of novel coronavirus (SARS-CoV-2) in Pakistan

Tracking the spread of Foot-and-Mouth Disease virus in South America

Nextstrain community build 'Molecular epidemiology of Chikungunya virus'

Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'

Scripts in R for Landscape Genomics Analyses v.2

Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE

LineageHomology uses phylogenies with reconstructed ancestral states to define groups of phylogenetic tips that have gained their states through homologous inheritance or de novo acquisition. LineageHomology can be applied to pathogen phylogeography to define transmission lineages and singletons and derive simple estimates of importation and loc…

Scripts in R for analyses of Isolation by Resistance (IBR) - PART 3 in LANDSCAPE GENOMICS PIPELINE