CobraPy - Chlorella vulgaris iFR947 GSM model - Programming Documentation - Python, pandas, Jupyter Notebooks
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Updated
Aug 15, 2022 - Jupyter Notebook
CobraPy - Chlorella vulgaris iFR947 GSM model - Programming Documentation - Python, pandas, Jupyter Notebooks
Scripts and Data underlying the 2017 Ecological Modelling paper on UVAFME-VOC.
Import data output from Visual Phenomics into a DataFrame
An R implementation of the P-model (new fork).
the LI6400 portable photosynthesis meter exports data as a series of poorly formatted .xls files. If you've used "add remark" to indicate sample ID, these are shown as rows, not a separate column. This script extracts relevant data, and moves the sample ID information from remarks into a column.
Data and R code accompanying article 10.3354/meps13886 in Marine Ecology Progress Series.
Generate a scheme of the photosynthetic machinery for presentations or slides.
Data and R code accompanying article 10.1111/gcb.16299 in Global Change Biology
Functions and a walkthrough to visualize common photosynthesis-irradiance relationships
Platform for further development of the Arabidopsis core metabolic model
The website for the ARCHIMED platform
Helper functions for Licor 6400 IRGA gas exchange files
Flux partitioning: NEE -> GPP
Integration of temperature-dependent constraints into a metabolic model of Arabidopsis thaliana
Scripts to manage and clean data from Photosynthesis-Irradiance curves obtained from different methods
Open-source PAR Meter
Apple II source code, in the Forth language, for a commercial photosynthesis educational program
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