phage
Here are 35 public repositories matching this topic...
Old repository comprising code for my HTHSCI 3BM6 phage modelling project.
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May 10, 2021 - Jupyter Notebook
Prediction of bacterial host for phage
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Jun 2, 2022 - C++
PhageOrder is a python package designed to reorder phage genomes based on its terminase subunit.
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Feb 26, 2024 - Python
Configurable short read de novo assembly container using SPAdes and bbmap
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May 10, 2024 - Python
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Jun 19, 2021 - Python
Scripts to analyze the data for the paper "An outstanding bacterial membranome requires CRISPR-Cas systems to avoid the intervention of phages" and derive the figures or subfigures shown in the manuscript.
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Oct 11, 2022 - Python
An Agent-Based Model simulating the coevolution dynamics between phages and bacteria. Was my essay in the ABM course by SFI
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Nov 17, 2023 - NetLogo
.m, .MAT, .PDF, .XLS files for "Canonical host-pathogen tradeoffs subverted by mutations with dual benefits"
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Sep 24, 2022 - MATLAB
Quick and dirty scripts for simple biology
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Jul 4, 2021 - Shell
A powerful deep learning (DL) tool and the trained models for the phage gene and protein identification with convolutional neural network (CNN).
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Nov 3, 2018 - Python
A toy Agent-Based Model of the coevolution dynamics between bacteria and phages, with a focus on environment structure
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Jul 8, 2022 - Julia
Quality of life improvement scripts for working with https://phaster.ca (PHAge Search Tool Enhanced Release)
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Mar 1, 2024 - Shell
Report, proposal, and mvp implementation of a simple tool for use in finding motifs in genome data. 🧬
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Mar 1, 2022 - Python
This repository contains the data and scripts used in Simulation Study of Viral Contiguous Sequence Identification Tools
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Dec 7, 2021 - Jupyter Notebook
2020 International Genetically Engineered Machine competition
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Dec 18, 2020 - HTML
TrIdent- Transduction Identification: Automatic detection, classification and characterization of active transduction events in microbiomes.
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May 27, 2024 - HTML
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