A Bio2BEL package for PFAM (https://pfam.xfam.org/)
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Updated
Nov 13, 2019 - Python
A Bio2BEL package for PFAM (https://pfam.xfam.org/)
Mapping domain co-occurrence networks with emphasis on c-d-GMP binding domains.
Snakemake pipeline for searching genomic sequences for those encoding proteins containing domains of choice
Minimal benchmark test to compare zstd (zstandard) compression with gzip for the datafile Pfam-A.full.gz
CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases.
Set of tools for protein sequence enrichment and protein domain finding
A deepchain-app to predict protein family 🔬
Find NLR hmms in protein sequences.
PARS is a python package for browsing and downloading files deposed in Pfam and Rfam databases (e.g. sequences, alignments, hmm). It has implemented classes dedicated to Pfam data like: PfamFamily or PfamClan. PARS is compatible with Biopython modules, but also is extended by HMMER wrapper which enables convenient usage of downloaded HMM files. …
Method for retrieving and visualising the protein domains of any protein coding isoform and of different genomes. Enables joint visualisations representing alternative splicing events.
Interactively explore the relationship between a variant of interest, protein structure, and previously reported variants.
PFAM's micro service to assist to Mistic2.
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