A compilation of pathway gene sets
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Updated
Apr 2, 2016 - Jupyter Notebook
A compilation of pathway gene sets
Caleydo - Visualization for Molecular Biology
An Angular application integrating escher for visualizing biological pathways.
PathVisio plugin to find relevant metabolic reactions from Rhea
Set of tools to organize pathway, RNAseq, and annotation data for subsequent analysis.
colorectal cancer
Pathfinder is a tool for the visual exploration of paths in large graphs.
Testing, development environment for a new project of KN BIBS
PathwayNet is a project based on Python and Bioinformatics. It tries to build up mathematic modes on simulating pathways of amino acid synthesis in E. coli.
Lightweight reusable web component for activity-centric visualizations and edits
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
Resources derived from PathMe
Extract pathways from KEGG database using EC entries.
Evaluating the reprodubility of top-ranked publications
Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
A web application for visualizing and exploring pathway knowledge in Biological Expression Language (BEL)
Exploring the network/pathway regularization landscape for gene expression data
A Bio2BEL package for converting the Gene Ontology (GO) to BEL
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