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pathogen-detection

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appliedbinf / URDO-SMOREd

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Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Disease Outbreak (URDO) branch at CDC. SMORE'D is a k-mer based classification tool capable of rapidly classifying read sequences generated by multi-pathogen detection platforms.

bioinformatics genomics ngs public-health microbial-genomics bacteria taxonomy-assignment ngs-analysis pathogen-detection
  • Updated Mar 24, 2020
  • Python

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