GET_HOMOLOGUES: a versatile software package for pan-genome analysis
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Updated
Apr 16, 2024 - Perl
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
Build a partitioned pangenome graph from microbial genomes
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Integrate multiple genome assemblies into a pangenome graph
Strain-level abundances estimation in metagenomic samples using variation graphs
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence information of pangenomic blocks of sequence or genes in a browser-like display.
Long read aligner for cyclic and acyclic pangenome graphs
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
A small R script for generating pangenome accumulation curves
Non-redundant pangenome assemblies from multiple genomes or bins
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
SPARQL endpoint to represent pangenomic data
Scripts to analyze the data for the paper "An outstanding bacterial membranome requires CRISPR-Cas systems to avoid the intervention of phages" and derive the figures or subfigures shown in the manuscript.
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