My PhD dissertation on bovine pangenome graph
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Updated
Jul 19, 2021 - TeX
My PhD dissertation on bovine pangenome graph
Single Cell guided Pangenome analysis pipeline using SPAdes, CheckM, GTDB-Tk, Prokka, Roary and extensive quality control.
Integrate multiple assemblies into a pangenome graph
Repository dedicated to the experiment section of the paper: Revisiting pangenome openness with k-mers. bioRxiv. (2023).
Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.
analyzing the pangenomes from the core genesets, estimates, the core genes, pangenomes, breakage in the phylogeny and also phylogenomics analysis.
SCAPE - StaphyloCoccus Aureus Pangenome Exploration
maf to panache and extracting all snps and pangenome specific information.
Scripts used by George S. Long
💻💡💪 D4GEN2023 Hackaton 🧬🏆👨💻
a pacbiohifi read check for the quick view of the read types.
PAPi (Pangenome Analysis Pipeline)
The lumpy skin disease virus (LSDV) pangenome variation graph (PVG)
Recombination between heterologous human acrocentric chromosomes
estimating proportion of the pangenome across the species post orthology runs.
Analysis of shared parts of a pangenome
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