Python code that I used in my blog posts on the Zarr file format.
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Updated
Oct 24, 2022 - Python
Python code that I used in my blog posts on the Zarr file format.
Run encapsulated docker containers with BioFormats2Raw in the Amazon Web Services infrastructure.
Course materials for the practical on the Defragmentation Training School 2 - Porto, 8-12 May 2023
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
ITK IO for images stored in OME-Zarr format.
Large-scale cell segmentation with cellpose.
Package to organize high content screening experiments.
Main tasks for the Fractal analytics platform
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