bcftools singularity container
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Updated
Nov 8, 2018 - Shell
bcftools singularity container
🎉 CNVetti – robust, efficient, and versatile clinical CNV calling from HTS data
amazon aws batch implementation of nextflow/rnaseq-encode-nf tutorial
Reports frequency of all single nucleotide changes for a group of fastq files
Collection of programs/scripts written for performing miscellaneous analysis on data from next generation sequencing
Deployed NGS algorithm, Disease prediction from genes and bioactivity prediction of renin in python
Code for our novel Variational Bayesian method for Zhang, Flaherty, BMC Bioinformatics, 2017. This is a Python-based tool for sensitive rare variant detection for NGS data.
Genomics Commons
a fastx parser for generating sequence length metrics
Neat AWS config, workflow, pipline
Udo Stenzel's perl-ngs — a collection of Perl tools for next-generation sequencing [MIRROR]
DeepMicrobes: a deep learning architecture for taxonomic classification of shotgun metagenomic reads
scripts and resources for performing miRNA sequencing analysis using tools like mirPRo and miRDeep2. Explore the code to process reads, map them to the genome, quantify known miRNAs, identify novel miRNAs, and browse the results
Genomic analysis pipeline for genotyping of Hepatitis C Virus
Divide NGS data by barcode and primer
Identification of gene-fusions, including EML4-ALK
Next gen sequencing of SARS-CoV-2 RNA and comparison between two cell lines
Convert bam to two wig files with strand-specific coverage
Illumina pipeline for 16S sequencing, completed in Python.
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