This is the repository for the BioImage Suite Web Project
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Updated
Mar 22, 2024 - JavaScript
This is the repository for the BioImage Suite Web Project
FSL-R Interface package
MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney
Preprocessing toolbox for rat rs-fMRI data
Matlab toolbox to deconvolve BOLD-fMRI data. It produces the underlying spatiotemporal neural and hemodynamic activity
Software for simulating MEG and EEG event-related responses. functional connectivity, and phase-amplitude coupling
Neuroimaging analysis in Python
Perform automatic skull-stripping for neuroimage analysis
Analysis code for connecting time-series properties of BOLD dynamics to connectivity properties using human fMRI and DWI data from HCP
Pypelines Utilizing a Modular Inventory
The Landing page for the NiChart project
A simple and intuitive wrapper for FSL tools.
Peak width of Skeletonized Mean Diffusivity (PSMD)
Pipelines for structural analysis for NeuroMet Project
Exploring, organizing, and analysing neuroimages (MR focus)
Implementation of algorithm in 'Yikang Liu et al. (2020) Automatic Brain Extraction for Rodent MRI Images. Neuroinformatics. doi: 10.1007/s12021-020-09453-z''
The QDECR package for vertex-wise analyses in R
Explore the neural basis of cognitive control with this repository's in-depth analysis of the Flanker Dataset using fMRI. Using bash scripting to streamline preprocessing and ROI analysis, while incorporating R scripts to explore brain region activity during the task.
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