Scripts to download genomes from the NCBI FTP servers
-
Updated
Jul 28, 2023 - Python
Scripts to download genomes from the NCBI FTP servers
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
🐣 locally query the ncbi taxonomy
VAPiD: Viral Annotation and Identification Pipeline
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
Turbocharge a PubMed literature search using citation counts and data from the NIH
A fast, easy way to present complex bioinformatics pipelines to biologists
Add a description, image, and links to the ncbi topic page so that developers can more easily learn about it.
To associate your repository with the ncbi topic, visit your repo's landing page and select "manage topics."