Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

The focus of this project is to develop a machine learning algorithm using the plasma lipid data provided to provide staging for a patient’s liver disease diagnosis.

Fall 2020 BGGN-213 class website

Biomedical Plant Disease Gold Standard Corpus Dataset For Relation Extraction From NCBI

Analysis of the origin of SARS-COV 2, how could this pandemic have started?

Using HTML, CSS, JS, PHP and USBServer to build a biological server that provides many biological utilities.

fetche sequences in ncbi

eutils

This is a Kaggle competition sponsored by Memorial Sloan Kettering Cancer Center. This competition is the first step in personalized medicine to determine oncogenicity of a tumor. Algorithm using sparse words to predict gene mutations effect on protein function.

A framework for keeping biomedical text mining result up-to-date

A link between NCBI's taxonomy and assembly databases

Python script to easily get genes in both fasta and genebank formats and download articles from pubmed

Data mining for NCBI genes

🪛 Fetch ncbi metadata for sra and assemblies

Ribosomal RNA Allele Tree

Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.

Batch upload bam files to NCBI SRA using aspera

NCBI Medical Genetics, UMLS Unified Medical Language System Concepts and PubMed linked citations

The goal of this project is use natural language processing to extract exclusion and inclusion criteria from free form text fields to match patients with clinical trials.