Python and R Scripts for Statistical analysis of available immunogobulin variable genes
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Updated
Sep 4, 2018 - Python
Python and R Scripts for Statistical analysis of available immunogobulin variable genes
Does multiple nucleotidic | aminoacidic BLAST queries in the NCBI BLAST web from a given multiFASTA and writes the output with the results. The queries are parallelized using Threads.
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
CPgeneProfiler R package repository
NCBI BLAST+ wrapper for WashU MGI cluster
Small project to use NCBI and RDP websites for Sequence alignments using Selenium for Python
Blast Query Builder, part of the PhyloclassTalk software for Pharo Smalltalk
This tiny piece of program helps you transferring NCBI Blast result to spreadsheet. You just need to download the Blast result in a single JSON file.
Interactive Visual Output and Functional Predictions visualisations for Job Dispatcher tool outputs
Targeted Probe Design Pipeline. Using mWGS genome bin clusters, prokka annotation predictions, and blast+ databases for generation, processing and filtering probe sequences.
The official Seqs-Extractor Repository
Guia de programas e ferramentas de bioinformática e química computacional
This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.
Targeted Probe Design Pipeline. Using mWGS genome bin clusters, prokka annotation predictions, and blast+ databases for generation, processing and filtering probe sequences.
This module extends the Tripal Analysis Module and provides a method for loading XML results from the NCBI blast program. Blast results appear on each feature page.
This repository contains the Gene Reader App Codebase
Just a simple program for predicting virus hosts.
divide blast query and run all chunks across HPC or localhost in parallelly
An R package to prepare data for phylogenetic analysis
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