An R shinny app for Substructure Search in MIBiG database.
-
Updated
Nov 9, 2020 - R
An R shinny app for Substructure Search in MIBiG database.
Reproducible code and data repository for the fungal ICS BGC prediction publication. GitHub repository is managed by Grant Nickles. For any data related questions email gnickles@wisc.edu or gnick317@gmail.com. For publication questions reach out to the corresponding authors Dr. Drott at Milton.Drott@usda.gov or Dr. Keller at npkeller@wisc.edu.
Retrieve chemical classes (ClassyFire/NPClassifier), as well as BGC classifications for MIBiG BGCs and match them.
NatPro: Natural Products - Thesis
This repo is for the scripts used in preparation of Flongle Actinomycetes paper
MFQL files for Natural Products Dereplication
Basic deployment details and issue tracking for the NP Atlas website
Source code and data for "Natural products have increased rates of clinical trial success throughout the drug development process"
Source code and data for "Exploring the known chemical space of the plant kingdom: Insights into taxonomic patterns, knowledge gaps, and bioactive regions"
Feature interrelation profiling using COCONUT and ZINC database
Graph Neural Network predicting the chemical composition of organism across the tree of life.
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
Repository for files related to DEREP-NP dereplication database
Codes for cheminformatics analysis of the phytochemical space
Data-driven elucidation of flavor chemistry
NatUKE: Natural Product Knowledge Extraction Benchmark
This repository gathers scripts used for the paper "Open and re-usable annotated mass spectrometry dataset of a chemodiverse collection of 1,600 plant extracts."
Machine learning meets natural products
a *biosynformatic* fingerprint to explore natural product distance and diversity
Add a description, image, and links to the natural-products topic page so that developers can more easily learn about it.
To associate your repository with the natural-products topic, visit your repo's landing page and select "manage topics."