Multi-omics projects on High grade serous ovarian cancer samples

Different python tools to validate and convert SDRF files

A flask API for the SDRF annotator tool

Evaluating the effect of SGCCA hyperparameters

R package for the correlation-based network analysis of methylation data

STREAM: enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data

a multiomics approach on lung cancer (subtype approach)

Analyzing TCGA cohorts and multiomic data in R

Data science and Informatics for Multiomics Integration

Bi-level regularized flux balance analysis of Synechococcus spp. PCC 7002

SDRF for proteomics annotator

A matrix factorization model for multi-omic data and biological pathways

Transcriptional and epigenetic signature of muscle tissue cells linked to atrophy

"DNA methylation and gene expression integration in cardiovascular disease"

Patient stratification and molecular mechanism identification using patient clinotypes and transcriptomics embeddings

PoGo is a proteogenomic tool developed primarily by Christoph Schlaffner. PoGo's purpose is to map peptides identified through mass spectrometry to a given genome. My edits of the tool are in order to expand its functionality to allow for the input of novel peptides without protein-coding region (CDS) annotation. The program is open-source and a…

Multi-omics analysis of LFQ proteomics and transcriptomics of an ALMS1 gene knockout cell model after TGF-B pathway stimulation.

Repository for Multi Omics data Integration for Transcriptomics and Metabolomics in RA mouse models

Single-Cell Data Analysis Tools