ODG: Omics Database Generator - Integration toolkit for -omics data

An R shiny application for visualization of EndoC-bH1 and human islet genomic data

Causal Inference Networks for Determining Expression Relationships Anthology

Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap

R package for COCA: Cluster-of-Clusters Analysis

R package for KLIC: Kernel Learning Integrative Clustering

MONET

🧠Deep Learning-based✔️ Ovarian Cancer🙅🏻‍♀️ Subtypes Identification using Multi-Omics Data✅

Multi-layered network-based pathway activity inference using directed random walks

Python implementation of NetICS (Network-based Integration of Multi-omics data).

Network-based analysis of omics with multi-objective optimization

TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R

Collection of walkthrough tutorials on how to use Tweedieverse for differential analysis of omics data.

Testing RGCCA integration

📊 📋 Bioconductor R package with Graphical Interface to handle multi-omic data by Classification, Enrichment and Network inference.

Multi-task deep learning framework for multi-omics data analysis

PhD thesis on data integration on inflammatory bowel disease

The SUbgraph BAsed mulTI-OMIcs Clustering (SUBATOMIC) framework infers interpretable modules with a specific topology.

A collection of source codes for network-based multi-omics analysis using integrated genome-wide association studies (GWAS) and transcriptomic data to identify genetic contribution into lithium response in patients with bipolar disorder (BD).

Tutorials for multimodal omics data analysis