Adversarial autoencoders for MHCI epitope and immunogenicity prediction
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Updated
May 23, 2023 - Jupyter Notebook
Adversarial autoencoders for MHCI epitope and immunogenicity prediction
Causal Inference Networks for Determining Expression Relationships Anthology
The documented analysis of the results reported in Akol et al., 2023 as R markdowns, Galaxy histories and jupyter logs..
PhD thesis on data integration on inflammatory bowel disease
Code for the crb2a multi omics manuscript
This is a repository to show my experience analyzing different kinds of Omics data.
R Shiny application for the multi-omics analysis of inflammatory bowel disease
a multiomics approach on lung cancer (lung subtypes approach in https://github.com/arriagajorge/Lung-Cancer-Multi-Omics-subtype)
This is now the main repository. A few older issues are still tracked on gitlab for reference.
mND uses multi-layer Network Diffusion to find gene networks that contain high scoring genes. It considers two or more "layers" of genome-wide scores and an interactome.
Network-based analysis of omics with multi-objective optimization
Tutorial on survival modelling with omics data
Python API to manage multi-omics digital objects
Official repository for GeneLab AWGs
gNOMO2 allows integrated multi-omics analyses of microbiomes
PhD thesis written in Quarto.
Evaluating metabolic and genomic data for predicting grain traits under high night temperature stress in rice
Machine learning to learn metabolite-histone-drug interactions in cancer.
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