TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy
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Updated
May 27, 2024 - Python
TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
analyze isomiRs from seqbuster tool
Scanning sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data
An open platform which provides information about miRNAs and genes from different popular databases
An awesome microRNA-sequencing pipeline
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
AmiR-P3 is an advanced ab initio plant miRNA prediction pipeline in Python, offering customizable prediction criteria and leveraging powerful computational techniques.
Testing how to use Jekyll and GitHub Pages to make a webiste.
Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.
Off-target analysis of siRNA knock down paired with RNAseq
Implementation of the miRBooking algorithm and metrics in C
Small RNAseq pipeline for paired-end reads
MirMachine, a command line tool to detect microRNA homologs in genome sequences.
An open-source R package to comprehensively explore the role of impaired miRNA regulatory networks in complex biological conditions.
Masters' thesis: Construction & analysis of miRNA-RAB sub-networks in human RAB associated disorders- A network biology approach
Simulation of interactions miRNA:Competing Targets
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