EXIS is an interactive R shiny application for isoform-specific expression analysis.
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Updated
Jul 8, 2021 - R
EXIS is an interactive R shiny application for isoform-specific expression analysis.
A structural equation modeling approach for the identification of gene expression adaptation in breast cancer patients at grade specific level
MicAff is a genomic data analysis tool. Application made with Shiny. It is used to analyze the data from the microarray experiment. Running on a local server, it allows you to load CEL data, their initial processing and further analysis.
This is a final group project for Computational Biology (CS167) implementing Tempo (http://bcb.cs.tufts.edu/tempo/) on a unique Parkinson's dataset. This project was contributed to equally by Kevin Kapner, Carlos Lopez-Rodriguez, and Qing Zhu.
PCTA web application by Django
My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).
differential expression analysis using R 🧬
pmadsim — Prospective Microarray Data Simulation. This is a fork of the madsim R package.
Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more
Analysis of microarray data from dHPC of rats treated with lps for 6h
Use Deep Learning Methods to analyze gene based microarray data to make classifcations on diseases, especially cancers, where the model is going to identify cancer stages for different cancers.
Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more
Code for my master thesis: "Microarray data analysis in prediction of breast cancer metastasis"
Differential Gene Analysis of Telomere Microarray Data
A pipeline to analyze DNA microarrays by Agilent.
TriCluster and microCluster gene expression clustering algorithms
This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.
protGear is a package for protein microarray data processing just before the main analysis.
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