Fuzzy finder using Smith-Waterman algorithm
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Updated
Mar 29, 2024 - Go
Fuzzy finder using Smith-Waterman algorithm
Python implementation of Striped Smith-Waterman Algorithm
Rapid local alignment search by in silico PCR
💻 Project for the course of Algorithms for Bioinformtics
My assignments from Munich
I developed a R package implementing the Smith-Waterman algorithm. The package building, check and installation works smoothly with 0 error (see log_file). BiocCheck results show 1 error because I’m not registered at the support site, 1 warning because BiocViews terms are invalid. Check the log_file for more details.
MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.
A compilation of all the programs in my bioinformatics course
Local and Global Alignment API
transposon insertion site identified from raw fastq file and transposon sequences, using local alignment for identification.
An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.
Global and Local Sequence Alignment
Algoritmos para el alineamiento de secuencias de ADN
Needleman-Wunsch Algorithm for global alignment and local alignment
Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.
Rapid and sensitive local alignment of genomic sequences employing motif anchors
Sequence alignment methods implementation
Implementation of the FASTA algorithm from bioinformatics
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