Python implementation of Striped Smith-Waterman Algorithm
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Updated
Mar 4, 2024 - C
Python implementation of Striped Smith-Waterman Algorithm
Needleman-Wunsch Algorithm for global alignment and local alignment
transposon insertion site identified from raw fastq file and transposon sequences, using local alignment for identification.
Algoritmos para el alineamiento de secuencias de ADN
Sequence alignment methods implementation
Rapid and sensitive local alignment of genomic sequences employing motif anchors
MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.
Fuzzy finder using Smith-Waterman algorithm
A compilation of all the programs in my bioinformatics course
Implementation of the FASTA algorithm from bioinformatics
Rapid local alignment search by in silico PCR
Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.
Global and Local Sequence Alignment
An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.
Local and Global Alignment API
💻 Project for the course of Algorithms for Bioinformtics
I developed a R package implementing the Smith-Waterman algorithm. The package building, check and installation works smoothly with 0 error (see log_file). BiocCheck results show 1 error because I’m not registered at the support site, 1 warning because BiocViews terms are invalid. Check the log_file for more details.
My assignments from Munich
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