human-cell-atlas
Here are 53 public repositories matching this topic...
This is the pipeline to perform a Drop-seq simulation based benchmark - see https://www.biorxiv.org/content/early/2018/01/17/248716
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Jul 25, 2018 - Shell
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Mar 8, 2023 - R
An R package that visualizes Human Cell Atlas annotations on an SVG cell image.
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May 5, 2022 - R
Ontology visualizer
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Jul 25, 2023 - TypeScript
Index and search single cell data.
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Sep 19, 2018 - Java
Download fastqs or supplementary files from GEO and upload to hca-util bucket
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Mar 26, 2024 - Shell
HumanCellAtlas upload-service validator for SpaceTx files
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Mar 5, 2019 - Makefile
Examples of custom panels for the iSEE package
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Jan 11, 2020 - R
Benchmarking pipeline published in https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1571-5
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Sep 14, 2018 - R
CITE-seq profiling of human PBMCs at baseline and activation conditions
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Sep 12, 2023 - R
CURRENTLY IN DEVELOPMENT. A package to provide user-friendly access to Human Cell Atlas resources. This package is meant to have similar functionality to the HCA data-explorer https://data.humancellatlas.org/explore/projects.
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Mar 15, 2023 - R
Convert supported filesets to the SpaceTx format
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Apr 24, 2019 - Java
Benchmarking pipeline published in https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1571-5
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Sep 14, 2018 - R
Clone of the Bioconductor repository for the BiocSingular package.
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Feb 29, 2024 - R
Binary Factor Analysis: a dimensionality reduction tool for noisy, high throughput single cell genomic data
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Mar 17, 2020 - R
Access data from the Human Cell Atlas project, directly via R/Bioconductor
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May 2, 2024 - R
Distributed processing with NumPy and Zarr
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Jan 22, 2019 - Python
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