An R shiny application for visualization of human PBMC CITE-seq data at baseline and activation conditions (1. LPS or 2. anti-CD3 and anti-CD28)

Overview of the app and study design

App Availability

This app is free to use and hosted at: https://thejacksonlaboratory.shinyapps.io/czi-pbmc-cite-seq

Publication Link

To learn more about this study and app please read our publication in Frontiers in Immunology: https://www.frontiersin.org/articles/10.3389/fimmu.2021.636720/full

Data Availability

Genotype data for the 10 human donors is available for download at: https://www.ebi.ac.uk/ena/browser/view/PRJEB40448

All raw fastq files for CITE-seq data (scRNA-seq, ADT, cell hashtag oligonucleotide) are available for download at: https://www.ebi.ac.uk/ena/browser/view/PRJEB40376

All data is also available on the Human Cell Atlas Data Portal: https://data.humancellatlas.org/explore/projects/efea6426-510a-4b60-9a19-277e52bfa815