Blazing fast toolkit to work with .hic and .cool files
-
Updated
May 26, 2024 - C++
Blazing fast toolkit to work with .hic and .cool files
Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.
This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
Hi-C Architect for Neural Networks
Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
Snakemake wrapper around the Arima Capture Hi-C (CHiC) workflow
Identification of enriched motif pairs from chromatin interaction data
Identification of enriched motif pairs from chromatin interaction data
Irreproducible discovery rate for genomic interaction data
A python library to display HiC data on a circular strip and to integrate genomic data
3DGB is a workflow to build 3D models of genomes from HiC data
Extract Sequence from Genome According to Annotation File
Add a description, image, and links to the hic topic page so that developers can more easily learn about it.
To associate your repository with the hic topic, visit your repo's landing page and select "manage topics."